small bug fixes and improvements

poetry.lock

@@ -66,6 +66,17 @@ doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphin
 test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
 trio = ["trio (>=0.23)"]
 
+[[package]]
+name = "appdirs"
+version = "1.4.4"
+description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
+optional = false
+python-versions = "*"
+files = [
+    {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"},
+    {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"},
+]
+
 [[package]]
 name = "appnope"
 version = "0.1.4"
@@ -384,13 +395,13 @@ plot = ["matplotlib (>=2.2.3)"]
 
 [[package]]
 name = "certifi"
-version = "2024.2.2"
+version = "2024.6.2"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
-    {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
+    {file = "certifi-2024.6.2-py3-none-any.whl", hash = "sha256:ddc6c8ce995e6987e7faf5e3f1b02b302836a0e5d98ece18392cb1a36c72ad56"},
+    {file = "certifi-2024.6.2.tar.gz", hash = "sha256:3cd43f1c6fa7dedc5899d69d3ad0398fd018ad1a17fba83ddaf78aa46c747516"},
 ]
 
 [[package]]
@@ -763,43 +774,43 @@ toml = ["tomli"]
 
 [[package]]
 name = "cryptography"
-version = "42.0.7"
+version = "42.0.8"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -1085,69 +1096,103 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc
 
 [[package]]
 name = "filelock"
-version = "3.14.0"
+version = "3.15.1"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "filelock-3.14.0-py3-none-any.whl", hash = "sha256:43339835842f110ca7ae60f1e1c160714c5a6afd15a2873419ab185334975c0f"},
-    {file = "filelock-3.14.0.tar.gz", hash = "sha256:6ea72da3be9b8c82afd3edcf99f2fffbb5076335a5ae4d03248bb5b6c3eae78a"},
+    {file = "filelock-3.15.1-py3-none-any.whl", hash = "sha256:71b3102950e91dfc1bb4209b64be4dc8854f40e5f534428d8684f953ac847fac"},
+    {file = "filelock-3.15.1.tar.gz", hash = "sha256:58a2549afdf9e02e10720eaa4d4470f56386d7a6f72edd7d0596337af8ed7ad8"},
 ]
 
 [package.extras]
 docs = ["furo (>=2023.9.10)", "sphinx (>=7.2.6)", "sphinx-autodoc-typehints (>=1.25.2)"]
-testing = ["covdefaults (>=2.3)", "coverage (>=7.3.2)", "diff-cover (>=8.0.1)", "pytest (>=7.4.3)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)", "pytest-timeout (>=2.2)"]
+testing = ["covdefaults (>=2.3)", "coverage (>=7.3.2)", "diff-cover (>=8.0.1)", "pytest (>=7.4.3)", "pytest-asyncio (>=0.21)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)", "pytest-timeout (>=2.2)"]
 typing = ["typing-extensions (>=4.8)"]
 
+[[package]]
+name = "flexcache"
+version = "0.3"
+description = "Saves and loads to the cache a transformed versions of a source object."
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "flexcache-0.3-py3-none-any.whl", hash = "sha256:d43c9fea82336af6e0115e308d9d33a185390b8346a017564611f1466dcd2e32"},
+    {file = "flexcache-0.3.tar.gz", hash = "sha256:18743bd5a0621bfe2cf8d519e4c3bfdf57a269c15d1ced3fb4b64e0ff4600656"},
+]
+
+[package.dependencies]
+typing-extensions = "*"
+
+[package.extras]
+test = ["pytest", "pytest-cov", "pytest-mpl", "pytest-subtests"]
+
+[[package]]
+name = "flexparser"
+version = "0.3.1"
+description = "Parsing made fun ... using typing."
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "flexparser-0.3.1-py3-none-any.whl", hash = "sha256:2e3e2936bec1f9277f777ef77297522087d96adb09624d4fe4240fd56885c013"},
+    {file = "flexparser-0.3.1.tar.gz", hash = "sha256:36f795d82e50f5c9ae2fde1c33f21f88922fdd67b7629550a3cc4d0b40a66856"},
+]
+
+[package.dependencies]
+typing-extensions = "*"
+
+[package.extras]
+test = ["pytest", "pytest-cov", "pytest-mpl", "pytest-subtests"]
+
 [[package]]
 name = "fonttools"
-version = "4.52.4"
+version = "4.53.0"
 description = "Tools to manipulate font files"
 optional = false
 python-versions = ">=3.8"
 files = [
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 arrow = ["pyarrow (>=1)"]
 dask = ["dask", "distributed"]
 dev = ["pre-commit", "ruff"]
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+python-versions = ">=3.7"
 files = [
-    {file = "jsonpointer-2.4-py2.py3-none-any.whl", hash = "sha256:15d51bba20eea3165644553647711d150376234112651b4f1811022aecad7d7a"},
-    {file = "jsonpointer-2.4.tar.gz", hash = "sha256:585cee82b70211fa9e6043b7bb89db6e1aa49524340dde8ad6b63206ea689d88"},
+    {file = "jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942"},
+    {file = "jsonpointer-3.0.0.tar.gz", hash = "sha256:2b2d729f2091522d61c3b31f82e11870f60b68f43fbc705cb76bf4b832af59ef"},
 ]
 
 [[package]]
@@ -1942,13 +1988,13 @@ jupyter-server = ">=1.1.2"
 
 [[package]]
 name = "jupyter-server"
-version = "2.14.0"
+version = "2.14.1"
 description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jupyter_server-2.14.0-py3-none-any.whl", hash = "sha256:fb6be52c713e80e004fac34b35a0990d6d36ba06fd0a2b2ed82b899143a64210"},
-    {file = "jupyter_server-2.14.0.tar.gz", hash = "sha256:659154cea512083434fd7c93b7fe0897af7a2fd0b9dd4749282b42eaac4ae677"},
+    {file = "jupyter_server-2.14.1-py3-none-any.whl", hash = "sha256:16f7177c3a4ea8fe37784e2d31271981a812f0b2874af17339031dc3510cc2a5"},
+    {file = "jupyter_server-2.14.1.tar.gz", hash = "sha256:12558d158ec7a0653bf96cc272bc7ad79e0127d503b982ed144399346694f726"},
 ]
 
 [package.dependencies]
@@ -1973,7 +2019,7 @@ traitlets = ">=5.6.0"
 websocket-client = ">=1.7"
 
 [package.extras]
-docs = ["ipykernel", "jinja2", "jupyter-client", "jupyter-server", "myst-parser", "nbformat", "prometheus-client", "pydata-sphinx-theme", "send2trash", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-openapi (>=0.8.0)", "sphinxcontrib-spelling", "sphinxemoji", "tornado", "typing-extensions"]
+docs = ["ipykernel", "jinja2", "jupyter-client", "myst-parser", "nbformat", "prometheus-client", "pydata-sphinx-theme", "send2trash", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-openapi (>=0.8.0)", "sphinxcontrib-spelling", "sphinxemoji", "tornado", "typing-extensions"]
 test = ["flaky", "ipykernel", "pre-commit", "pytest (>=7.0,<9)", "pytest-console-scripts", "pytest-jupyter[server] (>=0.7)", "pytest-timeout", "requests"]
 
 [[package]]
@@ -1997,13 +2043,13 @@ test = ["jupyter-server (>=2.0.0)", "pytest (>=7.0)", "pytest-jupyter[server] (>
 
 [[package]]
 name = "jupyterlab"
-version = "4.2.1"
+version = "4.2.2"
 description = "JupyterLab computational environment"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jupyterlab-4.2.1-py3-none-any.whl", hash = "sha256:6ac6e3827b3c890e6e549800e8a4f4aaea6a69321e2240007902aa7a0c56a8e4"},
-    {file = "jupyterlab-4.2.1.tar.gz", hash = "sha256:a10fb71085a6900820c62d43324005046402ffc8f0fde696103e37238a839507"},
+    {file = "jupyterlab-4.2.2-py3-none-any.whl", hash = "sha256:59ee9b839f43308c3dfd55d72d1f1a299ed42a7f91f2d1afe9c12a783f9e525f"},
+    {file = "jupyterlab-4.2.2.tar.gz", hash = "sha256:a534b6a25719a92a40d514fb133a9fe8f0d9981b0bbce5d8a5fcaa33344a3038"},
 ]
 
 [package.dependencies]
@@ -2017,6 +2063,7 @@ jupyter-server = ">=2.4.0,<3"
 jupyterlab-server = ">=2.27.1,<3"
 notebook-shim = ">=0.2"
 packaging = "*"
+setuptools = ">=40.1.0"
 tomli = {version = ">=1.2.2", markers = "python_version < \"3.11\""}
 tornado = ">=6.2.0"
 traitlets = "*"
@@ -2533,13 +2580,13 @@ files = [
 
 [[package]]
 name = "more-itertools"
-version = "10.2.0"
+version = "10.3.0"
 description = "More routines for operating on iterables, beyond itertools"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "more-itertools-10.2.0.tar.gz", hash = "sha256:8fccb480c43d3e99a00087634c06dd02b0d50fbf088b380de5a41a015ec239e1"},
-    {file = "more_itertools-10.2.0-py3-none-any.whl", hash = "sha256:686b06abe565edfab151cb8fd385a05651e1fdf8f0a14191e4439283421f8684"},
+    {file = "more-itertools-10.3.0.tar.gz", hash = "sha256:e5d93ef411224fbcef366a6e8ddc4c5781bc6359d43412a65dd5964e46111463"},
+    {file = "more_itertools-10.3.0-py3-none-any.whl", hash = "sha256:ea6a02e24a9161e51faad17a8782b92a0df82c12c1c8886fec7f0c3fa1a1b320"},
 ]
 
 [[package]]
@@ -2812,24 +2859,24 @@ files = [
 
 [[package]]
 name = "nodeenv"
-version = "1.9.0"
+version = "1.9.1"
 description = "Node.js virtual environment builder"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 files = [
-    {file = "nodeenv-1.9.0-py2.py3-none-any.whl", hash = "sha256:508ecec98f9f3330b636d4448c0f1a56fc68017c68f1e7857ebc52acf0eb879a"},
-    {file = "nodeenv-1.9.0.tar.gz", hash = "sha256:07f144e90dae547bf0d4ee8da0ee42664a42a04e02ed68e06324348dafe4bdb1"},
+    {file = "nodeenv-1.9.1-py2.py3-none-any.whl", hash = "sha256:ba11c9782d29c27c70ffbdda2d7415098754709be8a7056d79a737cd901155c9"},
+    {file = "nodeenv-1.9.1.tar.gz", hash = "sha256:6ec12890a2dab7946721edbfbcd91f3319c6ccc9aec47be7c7e6b7011ee6645f"},
 ]
 
 [[package]]
 name = "notebook"
-version = "7.2.0"
+version = "7.2.1"
 description = "Jupyter Notebook - A web-based notebook environment for interactive computing"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "notebook-7.2.0-py3-none-any.whl", hash = "sha256:b4752d7407d6c8872fc505df0f00d3cae46e8efb033b822adacbaa3f1f3ce8f5"},
-    {file = "notebook-7.2.0.tar.gz", hash = "sha256:34a2ba4b08ad5d19ec930db7484fb79746a1784be9e1a5f8218f9af8656a141f"},
+    {file = "notebook-7.2.1-py3-none-any.whl", hash = "sha256:f45489a3995746f2195a137e0773e2130960b51c9ac3ce257dbc2705aab3a6ca"},
+    {file = "notebook-7.2.1.tar.gz", hash = "sha256:4287b6da59740b32173d01d641f763d292f49c30e7a51b89c46ba8473126341e"},
 ]
 
 [package.dependencies]
@@ -2908,18 +2955,18 @@ files = [
 
 [[package]]
 name = "opencv-python"
-version = "4.9.0.80"
+version = "4.10.0.82"
 description = "Wrapper package for OpenCV python bindings."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "opencv-python-4.9.0.80.tar.gz", hash = "sha256:1a9f0e6267de3a1a1db0c54213d022c7c8b5b9ca4b580e80bdc58516c922c9e1"},
-    {file = "opencv_python-4.9.0.80-cp37-abi3-macosx_10_16_x86_64.whl", hash = "sha256:7e5f7aa4486651a6ebfa8ed4b594b65bd2d2f41beeb4241a3e4b1b85acbbbadb"},
-    {file = "opencv_python-4.9.0.80-cp37-abi3-macosx_11_0_arm64.whl", hash = "sha256:71dfb9555ccccdd77305fc3dcca5897fbf0cf28b297c51ee55e079c065d812a3"},
-    {file = "opencv_python-4.9.0.80-cp37-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:7b34a52e9da36dda8c151c6394aed602e4b17fa041df0b9f5b93ae10b0fcca2a"},
-    {file = "opencv_python-4.9.0.80-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e4088cab82b66a3b37ffc452976b14a3c599269c247895ae9ceb4066d8188a57"},
-    {file = "opencv_python-4.9.0.80-cp37-abi3-win32.whl", hash = "sha256:dcf000c36dd1651118a2462257e3a9e76db789a78432e1f303c7bac54f63ef6c"},
-    {file = "opencv_python-4.9.0.80-cp37-abi3-win_amd64.whl", hash = "sha256:3f16f08e02b2a2da44259c7cc712e779eff1dd8b55fdb0323e8cab09548086c0"},
+    {file = "opencv-python-4.10.0.82.tar.gz", hash = "sha256:dbc021eaa310c4145c47cd648cb973db69bb5780d6e635386cd53d3ea76bd2d5"},
+    {file = "opencv_python-4.10.0.82-cp37-abi3-macosx_11_0_arm64.whl", hash = "sha256:5f78652339957ec24b80a782becfb32f822d2008a865512121fad8c3ce233e9a"},
+    {file = "opencv_python-4.10.0.82-cp37-abi3-macosx_12_0_x86_64.whl", hash = "sha256:e6be19a0615aa8c4e0d34e0c7b133e26e386f4b7e9b557b69479104ab2c133ec"},
+    {file = "opencv_python-4.10.0.82-cp37-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5b49e530f7fd86f671514b39ffacdf5d14ceb073bc79d0de46bbb6b0cad78eaf"},
+    {file = "opencv_python-4.10.0.82-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:955c5ce8ac90c9e4636ad7f5c0d9c75b80abbe347182cfd09b0e3eec6e50472c"},
+    {file = "opencv_python-4.10.0.82-cp37-abi3-win32.whl", hash = "sha256:ff54adc9e4daaf438e669664af08bec4a268c7b7356079338b8e4fae03810f2c"},
+    {file = "opencv_python-4.10.0.82-cp37-abi3-win_amd64.whl", hash = "sha256:2e3c2557b176f1e528417520a52c0600a92c1bb1c359f3df8e6411ab4293f065"},
 ]
 
 [package.dependencies]
@@ -2930,13 +2977,13 @@ numpy = [
 
 [[package]]
 name = "openpyxl"
-version = "3.1.3"
+version = "3.1.4"
 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
-    {file = "openpyxl-3.1.3-py2.py3-none-any.whl", hash = "sha256:25071b558db709de9e8782c3d3e058af3b23ffb2fc6f40c8f0c45a154eced2c3"},
-    {file = "openpyxl-3.1.3.tar.gz", hash = "sha256:8dd482e5350125b2388070bb2477927be2e8ebc27df61178709bc8c8751da2f9"},
+    {file = "openpyxl-3.1.4-py2.py3-none-any.whl", hash = "sha256:ec17f6483f2b8f7c88c57e5e5d3b0de0e3fb9ac70edc084d28e864f5b33bbefd"},
+    {file = "openpyxl-3.1.4.tar.gz", hash = "sha256:8d2c8adf5d20d6ce8f9bca381df86b534835e974ed0156dacefa76f68c1d69fb"},
 ]
 
 [package.dependencies]
@@ -2988,13 +3035,13 @@ files = [
 
 [[package]]
 name = "packaging"
-version = "24.0"
+version = "24.1"
 description = "Core utilities for Python packages"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "packaging-24.0-py3-none-any.whl", hash = "sha256:2ddfb553fdf02fb784c234c7ba6ccc288296ceabec964ad2eae3777778130bc5"},
-    {file = "packaging-24.0.tar.gz", hash = "sha256:eb82c5e3e56209074766e6885bb04b8c38a0c015d0a30036ebe7ece34c9989e9"},
+    {file = "packaging-24.1-py3-none-any.whl", hash = "sha256:5b8f2217dbdbd2f7f384c41c628544e6d52f2d0f53c6d0c3ea61aa5d1d7ff124"},
+    {file = "packaging-24.1.tar.gz", hash = "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002"},
 ]
 
 [[package]]
@@ -3243,16 +3290,19 @@ xmp = ["defusedxml"]
 
 [[package]]
 name = "pint"
-version = "0.23"
+version = "0.24"
 description = "Physical quantities module"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 files = [
-    {file = "Pint-0.23-py3-none-any.whl", hash = "sha256:df79b6b5f1beb7ed0cd55d91a0766fc55f972f757a9364e844958c05e8eb66f9"},
-    {file = "Pint-0.23.tar.gz", hash = "sha256:e1509b91606dbc52527c600a4ef74ffac12fff70688aff20e9072409346ec9b4"},
+    {file = "Pint-0.24-py3-none-any.whl", hash = "sha256:c82fe82b30421817f9baa869df770bfed841c4a62bd5ef015942a0ea69e7282f"},
+    {file = "pint-0.24.tar.gz", hash = "sha256:c6c7c027b821413db1ac46b3b7bd296592848b5aec29a88cfc6e378fd1371903"},
 ]
 
 [package.dependencies]
+appdirs = ">=1.4.4"
+flexcache = ">=0.3"
+flexparser = ">=0.3"
 typing-extensions = "*"
 
 [package.extras]
@@ -3260,7 +3310,7 @@ babel = ["babel (<=2.8)"]
 bench = ["pytest", "pytest-codspeed"]
 dask = ["dask"]
 mip = ["mip (>=1.13)"]
-numpy = ["numpy (>=1.19.5)"]
+numpy = ["numpy (>=1.23)"]
 pandas = ["pint-pandas (>=0.3)"]
 test = ["pytest", "pytest-benchmark", "pytest-cov", "pytest-mpl", "pytest-subtests"]
 testbase = ["pytest", "pytest-benchmark", "pytest-cov", "pytest-subtests"]
@@ -3316,13 +3366,13 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "pooch"
-version = "1.8.1"
-description = "\"Pooch manages your Python library's sample data files: it automatically downloads and stores them in a local directory, with support for versioning and corruption checks.\""
+version = "1.8.2"
+description = "A friend to fetch your data files"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "pooch-1.8.1-py3-none-any.whl", hash = "sha256:6b56611ac320c239faece1ac51a60b25796792599ce5c0b1bb87bf01df55e0a9"},
-    {file = "pooch-1.8.1.tar.gz", hash = "sha256:27ef63097dd9a6e4f9d2694f5cfbf2f0a5defa44fccafec08d601e731d746270"},
+    {file = "pooch-1.8.2-py3-none-any.whl", hash = "sha256:3529a57096f7198778a5ceefd5ac3ef0e4d06a6ddaf9fc2d609b806f25302c47"},
+    {file = "pooch-1.8.2.tar.gz", hash = "sha256:76561f0de68a01da4df6af38e9955c4c9d1a5c90da73f7e40276a5728ec83d10"},
 ]
 
 [package.dependencies]
@@ -3405,13 +3455,13 @@ twisted = ["twisted"]
 
 [[package]]
 name = "prompt-toolkit"
-version = "3.0.45"
+version = "3.0.47"
 description = "Library for building powerful interactive command lines in Python"
 optional = false
 python-versions = ">=3.7.0"
 files = [
-    {file = "prompt_toolkit-3.0.45-py3-none-any.whl", hash = "sha256:a29b89160e494e3ea8622b09fa5897610b437884dcdcd054fdc1308883326c2a"},
-    {file = "prompt_toolkit-3.0.45.tar.gz", hash = "sha256:07c60ee4ab7b7e90824b61afa840c8f5aad2d46b3e2e10acc33d8ecc94a49089"},
+    {file = "prompt_toolkit-3.0.47-py3-none-any.whl", hash = "sha256:0d7bfa67001d5e39d02c224b663abc33687405033a8c422d0d675a5a13361d10"},
+    {file = "prompt_toolkit-3.0.47.tar.gz", hash = "sha256:1e1b29cb58080b1e69f207c893a1a7bf16d127a5c30c9d17a25a5d77792e5360"},
 ]
 
 [package.dependencies]
@@ -4464,23 +4514,23 @@ sphinx = "*"
 
 [[package]]
 name = "sphinx-book-theme"
-version = "1.1.2"
+version = "1.1.3"
 description = "A clean book theme for scientific explanations and documentation with Sphinx"
 optional = false
 python-versions = ">=3.9"
 files = [
-    {file = "sphinx_book_theme-1.1.2-py3-none-any.whl", hash = "sha256:cee744466fde48f50302b851291b208aa67e726ca31b7a3bfb9b6e6a145663e0"},
-    {file = "sphinx_book_theme-1.1.2.tar.gz", hash = "sha256:7f3abcd146ca82e6f39d6db53711102b1c1d328d12f65e3e47ad9bf842614a49"},
+    {file = "sphinx_book_theme-1.1.3-py3-none-any.whl", hash = "sha256:a554a9a7ac3881979a87a2b10f633aa2a5706e72218a10f71be38b3c9e831ae9"},
+    {file = "sphinx_book_theme-1.1.3.tar.gz", hash = "sha256:1f25483b1846cb3d353a6bc61b3b45b031f4acf845665d7da90e01ae0aef5b4d"},
 ]
 
 [package.dependencies]
-pydata-sphinx-theme = ">=0.14"
+pydata-sphinx-theme = ">=0.15.2"
 sphinx = ">=5"
 
 [package.extras]
 code-style = ["pre-commit"]
 doc = ["ablog", "folium", "ipywidgets", "matplotlib", "myst-nb", "nbclient", "numpy", "numpydoc", "pandas", "plotly", "sphinx-copybutton", "sphinx-design", "sphinx-examples", "sphinx-tabs", "sphinx-thebe", "sphinx-togglebutton", "sphinxcontrib-bibtex", "sphinxcontrib-youtube", "sphinxext-opengraph"]
-test = ["beautifulsoup4", "coverage", "myst-nb", "pytest", "pytest-cov", "pytest-regressions", "sphinx_thebe"]
+test = ["beautifulsoup4", "coverage", "defusedxml", "myst-nb", "pytest", "pytest-cov", "pytest-regressions", "sphinx_thebe"]
 
 [[package]]
 name = "sphinx-copybutton"
@@ -4827,22 +4877,22 @@ files = [
 
 [[package]]
 name = "tornado"
-version = "6.4"
+version = "6.4.1"
 description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
 optional = false
-python-versions = ">= 3.8"
+python-versions = ">=3.8"
 files = [
-    {file = "tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:02ccefc7d8211e5a7f9e8bc3f9e5b0ad6262ba2fbb683a6443ecc804e5224ce0"},
-    {file = "tornado-6.4-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:27787de946a9cffd63ce5814c33f734c627a87072ec7eed71f7fc4417bb16263"},
-    {file = "tornado-6.4-cp38-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f7894c581ecdcf91666a0912f18ce5e757213999e183ebfc2c3fdbf4d5bd764e"},
-    {file = "tornado-6.4-cp38-abi3-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e43bc2e5370a6a8e413e1e1cd0c91bedc5bd62a74a532371042a18ef19e10579"},
-    {file = "tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f0251554cdd50b4b44362f73ad5ba7126fc5b2c2895cc62b14a1c2d7ea32f212"},
-    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_aarch64.whl", hash = "sha256:fd03192e287fbd0899dd8f81c6fb9cbbc69194d2074b38f384cb6fa72b80e9c2"},
-    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_i686.whl", hash = "sha256:88b84956273fbd73420e6d4b8d5ccbe913c65d31351b4c004ae362eba06e1f78"},
-    {file = "tornado-6.4-cp38-abi3-musllinux_1_1_x86_64.whl", hash = "sha256:71ddfc23a0e03ef2df1c1397d859868d158c8276a0603b96cf86892bff58149f"},
-    {file = "tornado-6.4-cp38-abi3-win32.whl", hash = "sha256:6f8a6c77900f5ae93d8b4ae1196472d0ccc2775cc1dfdc9e7727889145c45052"},
-    {file = "tornado-6.4-cp38-abi3-win_amd64.whl", hash = "sha256:10aeaa8006333433da48dec9fe417877f8bcc21f48dda8d661ae79da357b2a63"},
-    {file = "tornado-6.4.tar.gz", hash = "sha256:72291fa6e6bc84e626589f1c29d90a5a6d593ef5ae68052ee2ef000dfd273dee"},
+    {file = "tornado-6.4.1-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:163b0aafc8e23d8cdc3c9dfb24c5368af84a81e3364745ccb4427669bf84aec8"},
+    {file = "tornado-6.4.1-cp38-abi3-macosx_10_9_x86_64.whl", hash = "sha256:6d5ce3437e18a2b66fbadb183c1d3364fb03f2be71299e7d10dbeeb69f4b2a14"},
+    {file = "tornado-6.4.1-cp38-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e2e20b9113cd7293f164dc46fffb13535266e713cdb87bd2d15ddb336e96cfc4"},
+    {file = "tornado-6.4.1-cp38-abi3-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:8ae50a504a740365267b2a8d1a90c9fbc86b780a39170feca9bcc1787ff80842"},
+    {file = "tornado-6.4.1-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:613bf4ddf5c7a95509218b149b555621497a6cc0d46ac341b30bd9ec19eac7f3"},
+    {file = "tornado-6.4.1-cp38-abi3-musllinux_1_2_aarch64.whl", hash = "sha256:25486eb223babe3eed4b8aecbac33b37e3dd6d776bc730ca14e1bf93888b979f"},
+    {file = "tornado-6.4.1-cp38-abi3-musllinux_1_2_i686.whl", hash = "sha256:454db8a7ecfcf2ff6042dde58404164d969b6f5d58b926da15e6b23817950fc4"},
+    {file = "tornado-6.4.1-cp38-abi3-musllinux_1_2_x86_64.whl", hash = "sha256:a02a08cc7a9314b006f653ce40483b9b3c12cda222d6a46d4ac63bb6c9057698"},
+    {file = "tornado-6.4.1-cp38-abi3-win32.whl", hash = "sha256:d9a566c40b89757c9aa8e6f032bcdb8ca8795d7c1a9762910c722b1635c9de4d"},
+    {file = "tornado-6.4.1-cp38-abi3-win_amd64.whl", hash = "sha256:b24b8982ed444378d7f21d563f4180a2de31ced9d8d84443907a0a64da2072e7"},
+    {file = "tornado-6.4.1.tar.gz", hash = "sha256:92d3ab53183d8c50f8204a51e6f91d18a15d5ef261e84d452800d4ff6fc504e9"},
 ]
 
 [[package]]
@@ -4963,13 +5013,13 @@ files = [
 
 [[package]]
 name = "typing-extensions"
-version = "4.12.0"
+version = "4.12.2"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.12.0-py3-none-any.whl", hash = "sha256:b349c66bea9016ac22978d800cfff206d5f9816951f12a7d0ec5578b0a819594"},
-    {file = "typing_extensions-4.12.0.tar.gz", hash = "sha256:8cbcdc8606ebcb0d95453ad7dc5065e6237b6aa230a31e81d0f440c30fed5fd8"},
+    {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
+    {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
 ]
 
 [[package]]
@@ -5073,18 +5123,18 @@ files = [
 
 [[package]]
 name = "webcolors"
-version = "1.13"
+version = "24.6.0"
 description = "A library for working with the color formats defined by HTML and CSS."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "webcolors-1.13-py3-none-any.whl", hash = "sha256:29bc7e8752c0a1bd4a1f03c14d6e6a72e93d82193738fa860cbff59d0fcc11bf"},
-    {file = "webcolors-1.13.tar.gz", hash = "sha256:c225b674c83fa923be93d235330ce0300373d02885cef23238813b0d5668304a"},
+    {file = "webcolors-24.6.0-py3-none-any.whl", hash = "sha256:8cf5bc7e28defd1d48b9e83d5fc30741328305a8195c29a8e668fa45586568a1"},
+    {file = "webcolors-24.6.0.tar.gz", hash = "sha256:1d160d1de46b3e81e58d0a280d0c78b467dc80f47294b91b1ad8029d2cedb55b"},
 ]
 
 [package.extras]
 docs = ["furo", "sphinx", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-notfound-page", "sphinxext-opengraph"]
-tests = ["pytest", "pytest-cov"]
+tests = ["coverage[toml]"]
 
 [[package]]
 name = "webencodings"
@@ -5154,13 +5204,13 @@ h11 = ">=0.9.0,<1"
 
 [[package]]
 name = "xarray"
-version = "2024.5.0"
+version = "2024.6.0"
 description = "N-D labeled arrays and datasets in Python"
 optional = false
 python-versions = ">=3.9"
 files = [
-    {file = "xarray-2024.5.0-py3-none-any.whl", hash = "sha256:7ddedfe2294a0ab00f02d0fbdcb9c6300ec589f3cf436a9c7b7b577a12cd9bcf"},
-    {file = "xarray-2024.5.0.tar.gz", hash = "sha256:e0eb1cb265f265126795f388ed9591f3c752f2aca491f6c0576711fd15b708f2"},
+    {file = "xarray-2024.6.0-py3-none-any.whl", hash = "sha256:721a7394e8ec3d592b2d8ebe21eed074ac077dc1bb1bd777ce00e41700b4866c"},
+    {file = "xarray-2024.6.0.tar.gz", hash = "sha256:0b91e0bc4dc0296947947640fe31ec6e867ce258d2f7cbc10bedf4a6d68340c7"},
 ]
 
 [package.dependencies]
@@ -5178,18 +5228,18 @@ viz = ["matplotlib", "nc-time-axis", "seaborn"]
 
 [[package]]
 name = "zipp"
-version = "3.19.0"
+version = "3.19.2"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.19.0-py3-none-any.whl", hash = "sha256:96dc6ad62f1441bcaccef23b274ec471518daf4fbbc580341204936a5a3dddec"},
-    {file = "zipp-3.19.0.tar.gz", hash = "sha256:952df858fb3164426c976d9338d3961e8e8b3758e2e059e0f754b8c4262625ee"},
+    {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"},
+    {file = "zipp-3.19.2.tar.gz", hash = "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [extras]
 plots = ["matplotlib"]
@@ -5197,4 +5247,4 @@ plots = ["matplotlib"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.10, <3.11"
-content-hash = "604c1b6ebf699943ea38f98f2482d996a3d99c0d5a47361d20f28337d3acf05a"
+content-hash = "3a4df7f701cbf21ac587f032fe99bcf1c73803feb6f47f135a12eec718e0cfa5"

pyproject.toml

@@ -26,6 +26,7 @@ dask = "^2023.12.0"
 sphinx-exec-code = "^0.10"
 ghostscript = "^0.7"
 sphinx-markdown-tables = "^0.0.17"
+xarray = ">=2024.6.0"
 
 [tool.poetry.extras]
 plots = ["matplotlib"]

src/unfccc_ghg_data/helper/functions.py

@@ -89,6 +89,9 @@ def process_data_for_country(  # noqa PLR0913, PLR0912, PLR0915
     else:
         country_code = countries[0]
 
+    # set default tolerance
+    tolerance = 0.01
+
     # get category terminology
     cat_col = data_country.attrs["cat"]
     temp = re.findall(r"\((.*)\)", cat_col)
@@ -148,8 +151,6 @@ def process_data_for_country(  # noqa PLR0913, PLR0912, PLR0915
     if processing_info_country is not None:
         if "tolerance" in processing_info_country:
             tolerance = processing_info_country["tolerance"]
-        else:
-            tolerance = 0.01
 
         # remove entities if needed
         if "ignore_entities" in processing_info_country:
@@ -330,7 +331,7 @@ def process_data_for_country(  # noqa PLR0913, PLR0912, PLR0915
             category_conversion,
             cat_terminology_out,
             debug=False,
-            tolerance=0.01,
+            tolerance=tolerance,
         )
     else:
         cat_terminology_out = cat_terminology_in
@@ -350,7 +351,7 @@ def process_data_for_country(  # noqa PLR0913, PLR0912, PLR0915
     # create gas baskets
     if gas_baskets:
         data_country = data_country.pr.add_aggregates_variables(
-            gas_baskets=gas_baskets, skipna=True, min_count=1
+            gas_baskets=gas_baskets, skipna=True, min_count=1, tolerance=tolerance
         )
 
     # amend title and comment

src/unfccc_ghg_data/unfccc_di_reader/unfccc_di_reader_config.py

@@ -362,6 +362,10 @@ cat_conversion = {
                 "sources": ["M.3.C.AG"],
                 "orig_cat_name": "Agriculture excluding livestock",
             },
+            "M.AG": {  # needed for e.g. Chile N2O
+                "sources": ["3.A", "M.AG.ELV"],
+                "orig_cat_name": "Agriculture",
+            },
             "3": {"sources": ["M.AG", "M.LULUCF"], "orig_cat_name": "AFOLU"},
         },
     },
@@ -416,7 +420,7 @@ di_processing_templates = {
         "DI2023-05-24": {
             "remove_ts": {
                 "2.A_H": {  # looks wrong in 2005
-                    "category": ["2.A", "2.B", "2.C", "2.D", "2.G"],
+                    "category": ["2.A", "2.B", "2.C", "2.D", "2.E", "2.F", "2.G"],
                     "entities": ["CO2", f"KYOTOGHG ({gwp_to_use})"],
                     "time": ["2005"],
                 },
@@ -431,6 +435,20 @@ di_processing_templates = {
                     "entities": ["CH4", f"KYOTOGHG ({gwp_to_use})", "N2O"],
                     "time": ["2005"],
                 },
+                "2B_GHG": {  # is 0 for 2002-2009 while CO2 is non-zero
+                    "category": ["2.B"],
+                    "entities": [f"KYOTOGHG ({gwp_to_use})"],
+                    "time": [
+                        "2002",
+                        "2003",
+                        "2004",
+                        "2005",
+                        "2006",
+                        "2007",
+                        "2008",
+                        "2009",
+                    ],
+                },
             },
             "downscale": {  # needed for 1990, 2000, 2005-2012
                 "sectors": {
@@ -539,7 +557,7 @@ di_processing_templates = {
                     "time": ["1994"],
                 },
             },
-            "agg_tolerance": 0.015,
+            "tolerance": 0.015,
             "ignore_entities": ["NMVOC"],  # errors when aggregating cats
             "aggregate_cats": {
                 "2": {
@@ -549,10 +567,14 @@ di_processing_templates = {
                 "15163": {
                     "sources": ["1", "2", "4", "6"],
                     "orig_cat_name": "Total GHG emissions excluding LULUCF/LUCF",
+                    # Total GHG emissions excluding LULUCF/LUCF
+                    # Total GHG emissions including LULUCF/LUCF
+                    "filter": {"entity": ["C2F6", "CF4"]},
                 },
                 "24540": {
                     "sources": ["1", "2", "5", "4", "6"],
                     "orig_cat_name": "Total GHG emissions including LULUCF/LUCF",
+                    "filter": {"entity": ["C2F6", "CF4"]},
                 },
             },
         },
@@ -654,7 +676,17 @@ di_processing_templates = {
             "remove_ts": {
                 "M.AG.ELV": {  # prescribed burning of savannas and agricultural soils
                     # are missing for all but 1 year
-                    "category": ["4", "4.B", "4.D", "4.E", "4.F", "15163", "24540"],
+                    "category": [
+                        "4",
+                        "4.A",
+                        "4.B",
+                        "4.C",
+                        "4.D",
+                        "4.E",
+                        "4.F",
+                        "15163",
+                        "24540",
+                    ],
                     "entities": ["N2O", f"KYOTOGHG ({gwp_to_use})"],
                 },
             },
@@ -686,10 +718,7 @@ di_processing_templates = {
                         "basket_contents": ["4.A", "4.B", "4.D", "4.G"],
                         "entities": [
                             "CH4",
-                            "CO2",
-                            f"KYOTOGHG ({gwp_to_use})",
-                        ],  # no N2O but
-                        # CO2 is unusual
+                        ],
                         "dim": "category (BURDI)",
                         "skipna_evaluation_dims": None,
                         "skipna": True,
@@ -996,16 +1025,87 @@ di_processing_templates = {
     # BTN 1994, 2000, 2015. patchy coverage but no downscaling needed / possible
     # BWA 1994, 2000, 2015. inconsistent coverage
     # TODO CAF 1994, 2003-2010. 1994 has different coverage and might be inconsistent
-    # CHL: more data in BUR4/5
+    "CAF": {
+        "DI2023-05-24": {  # KyotoGHG in energy sector inconsistent with gases for
+            # 2003 and later. Probably because CO2 only given
+            "remove_ts": {
+                "energy": {  # contains data for all subsectors
+                    "category": [
+                        "1",
+                        "1.A",
+                        "1.A.1",
+                        "1.A.2",
+                        "1.A.3",
+                        "1.A.4",
+                        "1.A.5",
+                    ],
+                    "entities": [f"KYOTOGHG ({gwp_to_use})"],
+                    "time": [
+                        "2003",
+                        "2004",
+                        "2005",
+                        "2006",
+                        "2007",
+                        "2008",
+                        "2009",
+                        "2010",
+                    ],
+                },
+            },
+        },
+    },
+    "CHL": {  # CHL: more data in BUR4/5
+        "DI2023-05-24": {
+            "remove_ts": {
+                "agri_n2o": {  # remove agri sector sum as dowscaled 4.G not included
+                    "category": ["4"],
+                    "time": [
+                        "1990",
+                        "1994",
+                        "2000",
+                        "2006",
+                        "2010",
+                        "2013",
+                        "2016",
+                        "2018",
+                    ],
+                    "entities": ["N2O"],
+                },
+                "agri_nox": {  # inconsistent
+                    "category": ["4.F"],
+                    "entities": ["NOx"],
+                },
+            },
+            "downscale": {
+                "entities": {
+                    "GHG": {
+                        "basket": f"KYOTOGHG ({gwp_to_use})",
+                        "basket_contents": ["N2O"],
+                        "sel": {"category (BURDI)": ["4.G"]},
+                    }
+                },
+            },
+            "basket_copy": {
+                "GWPs_to_add": ["AR4GWP100", "AR5GWP100", "AR6GWP100"],
+                "entities": ["UnspMixOfHFCs"],
+                "source_GWP": gwp_to_use,
+            },
+        },
+    },
     "CHN": {
         "DI2023-05-24": {  # 1994 (gaps), 2005 (needs downscaling), 2010, 2012, 2014
             # (relatively complete and consistent)
             "remove_ts": {
-                "1.A.1": {  # contains data for all subsectors
-                    "category": ["1.A.1"],
-                    "entities": ["N2O"],
+                "1.A.sub": {  # contains data for all subsectors for CH4, N2O
+                    "category": ["1.A.1", "1.A.2", "1.A.3", "1.A.4", "1.A.5"],
+                    "entities": ["N2O", "CH4", f"KYOTOGHG ({gwp_to_use})"],
                     "time": ["1994"],
                 },
+                # "4.G": {  # no gas detail available
+                #     "category": ["4.G"],
+                #     "entities": [f"KYOTOGHG ({gwp_to_use})"],
+                #     "time": ["1994", "2000", "2006", "2010", "2013", "2016", "2018"],
+                # },
             },
             "downscale": {  # needed for 2005
                 "sectors": {
@@ -1025,7 +1125,7 @@ di_processing_templates = {
                         "skipna_evaluation_dims": None,
                         "skipna": True,
                     },
-                    "1.A": {  # 2005
+                    "1.A": {  # 2005, 1994
                         "basket": "1.A",
                         "basket_contents": [
                             "1.A.1",
@@ -1034,13 +1134,14 @@ di_processing_templates = {
                             "1.A.4",
                             "1.A.5",
                         ],
-                        "entities": ["CO2"],
+                        "entities": ["CO2", "CH4", "N2O"],
                         "dim": "category (BURDI)",
                         "skipna_evaluation_dims": None,
                         "skipna": True,
                     },
                     # with current functionality we can't downscale 1.A further for
                     # non-CO2 as it needs several steps and CO2 is present
+                    # yes we can
                     "2": {  # 2005
                         "basket": "2",
                         "basket_contents": ["2.A", "2.B", "2.C"],
@@ -1049,11 +1150,25 @@ di_processing_templates = {
                         "skipna_evaluation_dims": None,
                         "skipna": True,
                     },
+                    "2_fgases": {  # 2005
+                        "basket": "2",
+                        "basket_contents": ["2.C", "2.E", "2.F"],
+                        "entities": [
+                            f"HFCS ({gwp_to_use})",
+                            f"PFCS ({gwp_to_use})",
+                            "SF6",
+                        ],
+                        "dim": "category (BURDI)",
+                        "sel": {"time": ["2005", "2010", "2012", "2014"]},
+                        "skipna_evaluation_dims": None,
+                        "skipna": True,
+                    },
                     "4": {  # 2005
                         "basket": "4",
                         "basket_contents": ["4.A", "4.B", "4.C", "4.D", "4.E", "4.F"],
                         "entities": ["CH4", "N2O"],
                         "dim": "category (BURDI)",
+                        "sel": {"time": ["2005", "2010", "2012", "2014"]},
                         "skipna_evaluation_dims": None,
                         "skipna": True,
                     },
@@ -1065,14 +1180,14 @@ di_processing_templates = {
                         "skipna_evaluation_dims": None,
                         "skipna": True,
                     },
-                    "6": {  # 2005
-                        "basket": "6",
-                        "basket_contents": ["6.A", "6.B", "6.C", "6.D"],
-                        "entities": ["CO2", "CH4", "N2O"],
-                        "dim": "category (BURDI)",
-                        "skipna_evaluation_dims": None,
-                        "skipna": True,
-                    },
+                    # "6": {  # 2005 other years are to inconsistent regarding sectors
+                    #     "basket": "6",
+                    #     "basket_contents": ["6.A", "6.B", "6.C", "6.D"],
+                    #     "entities": ["CO2", "CH4", "N2O"],
+                    #     "dim": "category (BURDI)",
+                    #     "skipna_evaluation_dims": None,
+                    #     "skipna": True,
+                    # },
                 },
                 "entities": {
                     "HFC": {
@@ -1111,18 +1226,19 @@ di_processing_templates = {
                     "1.A": {  # 2005
                         "basket": "1.A",
                         "basket_contents": ["1.A.1", "1.A.2", "1.A.3", "1.A.4"],
-                        "entities": ["CO2", "CH4", "N2O", f"KYOTOGHG ({gwp_to_use})"],
+                        "entities": ["CO2", "CH4", "N2O"],
                         "dim": "category (BURDI)",
                         "skipna_evaluation_dims": None,
                         "skipna": True,
                     },
                 },
             },
-            "basket_copy": {
-                "GWPs_to_add": ["AR4GWP100", "AR5GWP100", "AR6GWP100"],
-                "entities": ["FGASES"],
-                "source_GWP": gwp_to_use,
-            },
+            # "basket_copy": {
+            #     "GWPs_to_add": ["AR4GWP100", "AR5GWP100", "AR6GWP100"],
+            #     "entities": ["FGASES"],
+            #     "source_GWP": gwp_to_use,
+            # },
+            # "tolerance": 0.133  # for FGASES / SF6 which has only 1 significant digit
         },
     },
     # CMR: 1994, 2000, not fully consistent
@@ -1244,6 +1360,11 @@ di_processing_templates = {
                     "entities": [f"KYOTOGHG ({gwp_to_use})", "CH4"],
                     "time": ["1994"],
                 },
+                "energy_GHG": {  # GHGs only have CO2
+                    "category": ["1.A", "1.A.1", "1.A.2", "1.A.3", "1.A.4", "1.A.5"],
+                    "entities": [f"KYOTOGHG ({gwp_to_use})", "CH4"],
+                    "time": ["2001", "2002", "2003", "2004", "2005"],
+                },
             },
             # LULUCF has gaps, cat 0 assumes 0 for LULUCF in these years
             # we omit aerosols and ghg precusors as only so2 can be downscaled
@@ -1266,12 +1387,6 @@ di_processing_templates = {
                             ]
                         },
                     },
-                    "1_CO2": {
-                        "basket": "1",
-                        "basket_contents": ["1.A", "1.B"],
-                        "entities": ["CO2"],
-                        "dim": "category (BURDI)",
-                    },
                     "1.A": {
                         "basket": "1.A",
                         "basket_contents": [
@@ -1471,6 +1586,22 @@ di_processing_templates = {
     },
     "ETH": {
         "DI2023-05-24": {  # 1990-1993 (downscaling needed), 1994-2013
+            "remove_ts": {
+                "agri_N2O": {  # N2O from Agricultural Soils is missing for 2005 and
+                    # 2007 we have to remove all N2O and kyotoGHG agricultural
+                    # data for these years
+                    "time": ["2005", "2007"],
+                    "category (BURDI)": ["4", "4.A", "4.B", "4.C", "4.D", "4.E"],
+                    "entities": [f"KYOTOGHG ({gwp_to_use})", "N2O"],
+                },
+                "LULUCF_GHG": {  # N2O from Agricultural Soils is missing for 2005 and
+                    # 2007 we have to remove all N2O and kyotoGHG agricultural
+                    # data for these years
+                    "time": ["2005", "2007"],
+                    "category (BURDI)": ["5"],
+                    "entities": [f"KYOTOGHG ({gwp_to_use})", "N2O"],
+                },
+            },
             "downscale": {
                 # omit aerosols / ghg precursors as missing for most years
                 "sectors": {  # for 1990-1994
@@ -1524,43 +1655,43 @@ di_processing_templates = {
         "DI2023-05-24": {  # 1990-1997, 2000, 2000-2013 (more data in NC4)
             "downscale": {
                 "sectors": {  # for 1991-1997
-                    "1.A": {
-                        "basket": "1.A",
-                        "basket_contents": [
-                            "1.A.1",
-                            "1.A.2",
-                            "1.A.3",
-                            "1.A.4",
-                            "1.A.5",
-                        ],
-                        "entities": ["CO2", "CH4", "N2O"],
-                        "dim": "category (BURDI)",
-                    },
-                    "2": {
-                        "basket": "2",
-                        "basket_contents": [
-                            "2.A",
-                            "2.B",
-                            "2.C",
-                            "2.D",
-                            "2.E",
-                            "2.F",
-                            "2.G",
-                        ],
-                        "entities": [
-                            "CO2",
-                            "CH4",
-                            "N2O",
-                            "C2F6",
-                            "CF4",
-                            "HFC125",
-                            "HFC134",
-                            "HFC134a",
-                            "HFC32",
-                            "SF6",
-                        ],
-                        "dim": "category (BURDI)",
-                    },
+                    # "1.A": {  # inconsistent coverage in key years (1990 / 2000)
+                    #     "basket": "1.A",
+                    #     "basket_contents": [
+                    #         "1.A.1",
+                    #         "1.A.2",
+                    #         "1.A.3",
+                    #         "1.A.4",
+                    #         "1.A.5",
+                    #     ],
+                    #     "entities": ["CO2", "CH4", "N2O"],
+                    #     "dim": "category (BURDI)",
+                    # },
+                    # "2": {  # inconsistent coverage in key years (1990 / 2000)
+                    #     "basket": "2",
+                    #     "basket_contents": [
+                    #         "2.A",
+                    #         "2.B",
+                    #         "2.C",
+                    #         "2.D",
+                    #         "2.E",
+                    #         "2.F",
+                    #         "2.G",
+                    #     ],
+                    #     "entities": [
+                    #         "CO2",
+                    #         "CH4",
+                    #         "N2O",
+                    #         "C2F6",
+                    #         "CF4",
+                    #         "HFC125",
+                    #         "HFC134",
+                    #         "HFC134a",
+                    #         "HFC32",
+                    #         "SF6",
+                    #     ],
+                    #     "dim": "category (BURDI)",
+                    # },
                     "4": {
                         "basket": "4",
                         "basket_contents": [
@@ -1574,6 +1705,19 @@ di_processing_templates = {
                         ],
                         "entities": ["CH4", "N2O"],
                         "dim": "category (BURDI)",
+                        "sel": {
+                            "time": [
+                                "1990",
+                                "1991",
+                                "1992",
+                                "1993",
+                                "1994",
+                                "1995",
+                                "1996",
+                                "1997",
+                                "2000",
+                            ]
+                        },
                     },
                     # 5 subsectors are chaotic
                     "6": {
@@ -1648,7 +1792,22 @@ di_processing_templates = {
                 },
                 "livestock": {  # inconsistent
                     "category": ["4.B", "4"],
-                    "entities": ["N2O", f"KYOTOGHG ({gwp_to_use})"],
+                    "entities": ["N2O"],
+                    "time": ["2000"],
+                },
+                "livestock_GHG": {  # remove because N2O removed
+                    "category": [
+                        "4.A",
+                        "4.B",
+                        "4.C",
+                        "4.D",
+                        "4.E",
+                        "4.F",
+                        "4.G",
+                        "4",
+                        "5",
+                    ],
+                    "entities": [f"KYOTOGHG ({gwp_to_use})"],
                     "time": ["2000"],
                 },
             },
@@ -1657,6 +1816,13 @@ di_processing_templates = {
     # HTI: 1994-2000
     "IDN": {
         "DI2023-05-24": {  # 1990-1994, 2000
+            "remove_ts": {
+                "waste": {  # waste subsector data is inconsistent
+                    "entities": ["CH4", "CO2", "N2O", f"KYOTOGHG ({gwp_to_use})"],
+                    "category (BURDI)": ["6.A", "6.B", "6.C", "6.D"],
+                    "time": ["2000"],
+                },
+            },
             "downscale": {
                 "sectors": {  # for 1990-1993
                     "1.B": {
@@ -1750,15 +1916,12 @@ di_processing_templates = {
             "remove_ts": {
                 "agri_2000": {  # data are like that in NC2, but completely
                     # inconsistent with NC1,3
-                    "category": ["4", "4.A", "4.B", "24540", "15163"],
-                    "entities": ["CH4", f"KYOTOGHG ({gwp_to_use})"],
-                    "time": ["2000"],
-                },
-                "agri_1994": {  # inconsistent with later submissions
                     "category": [
                         "4",
+                        "4.A",
                         "4.B",
                         "4.C",
+                        "4.D",
                         "4.E",
                         "4.F",
                         "4.G",
@@ -1766,8 +1929,27 @@ di_processing_templates = {
                         "15163",
                     ],
                     "entities": ["CH4", f"KYOTOGHG ({gwp_to_use})"],
-                    "time": ["1994"],
+                    "time": ["2000"],
                 },
+                "LU_2000": {  # remove GHG sum to avoid building AFOLU without AG
+                    "category": ["5"],
+                    "entities": [f"KYOTOGHG ({gwp_to_use})"],
+                    "time": ["2000"],
+                },
+                # "agri_1994": {  # inconsistent with later submissions
+                #     "category": [
+                #         "4",
+                #         "4.B",
+                #         "4.C",
+                #         "4.E",
+                #         "4.F",
+                #         "4.G",
+                #         "24540",
+                #         "15163",
+                #     ],
+                #     "entities": ["CH4", f"KYOTOGHG ({gwp_to_use})"],
+                #     "time": ["1994"],
+                # },
                 "waste": {
                     "category": ["6", "6.A", "6.B", "6.C", "6.D", "15163", "24540"],
                     "entities": ["CH4", f"KYOTOGHG ({gwp_to_use})"],
@@ -1801,7 +1983,7 @@ di_processing_templates = {
         "DI2023-05-24": {
             "remove_ts": {
                 "agri_n2O": {  # very high compared to CH4 and total emissions
-                    "category": ["4", "4.B", "15163", "24540"],
+                    "category": ["4", "4.A", "4.B", "15163", "24540"],
                     "entities": ["N2O", f"KYOTOGHG ({gwp_to_use})"],
                 },
             },
@@ -1897,11 +2079,7 @@ di_processing_templates = {
                             "category (BURDI)": [
                                 "1",
                                 "2",
-                                "4",
-                                "5",
                                 "6",
-                                "15163",
-                                "24540",
                                 "1.A",
                                 "1.A.1",
                                 "1.A.2",
@@ -1919,14 +2097,49 @@ di_processing_templates = {
                                 "4.D",
                                 "5.A",
                                 "5.B",
+                                "5.E",
                                 "6.A",
                                 "6.B",
                                 "6.D",
-                            ]
+                            ],
+                            "time": [
+                                "2000",
+                                "2004",
+                                "2005",
+                                "2006",
+                                "2008",
+                                "2010",
+                                "2012",
+                            ],
                         },
                     },
                 },
             },
+            "aggregate_coords": {
+                "category (BURDI)": {
+                    "4": {
+                        "sources": ["4.A", "4.B", "4.C", "4.D"],
+                        "orig_cat_name": "4.  Agriculture",
+                    },
+                    "5": {
+                        "sources": ["5.A", "5.B", "5.E"],
+                        "orig_cat_name": "5.  Land-Use Change and Forestry",
+                        "tolerance": 0.018,  # sum for CO2 inconsistent
+                    },
+                    "15163": {
+                        "sources": ["1", "2", "3", "4", "6"],
+                        "orig_cat_name": "Total GHG emissions excluding LULUCF/LUCF",
+                    },
+                    "24540": {
+                        "sources": ["1", "2", "3", "4", "5", "6"],
+                        "orig_cat_name": "Total GHG emissions including LULUCF/LUCF",
+                    },
+                    # "15163": {
+                    #     "sources": [],
+                    #     "orig_cat_name": ","
+                    # },
+                }
+            },
         },
     },
     # MDA: 1990-2013 (more data in NIR / NC5)
@@ -2069,7 +2282,16 @@ di_processing_templates = {
     # MNE: more data in BUR3
     # MNG: 1990-1998, 2006. Some details missing in 1990-1998 but to disconnected
     # from 2006 data to use that for downscaling
-    # MOZ: 1990, 1994
+    "MOZ": {  # 1990, 1994
+        "DI2023-05-24": {
+            "tolerance": 0.05,  # agriculture inconsistent (likely rounding)
+            "basket_copy": {
+                "GWPs_to_add": ["AR4GWP100", "AR5GWP100", "AR6GWP100"],
+                "entities": ["PFCS"],
+                "source_GWP": gwp_to_use,
+            },
+        }
+    },
     # MRT: more data in BUR 1 and 2
     "MUS": {
         "DI2023-05-24": {  # 1995, 200-2006, 2013
@@ -2088,7 +2310,21 @@ di_processing_templates = {
         },
     },
     # MWI: 1990, 1994. inconsistency in 1.B.1: 1994: CO2, 1990: CH4
-    # MYS: more data in BUR 3, 4
+    "MYS": {  # more data in BUR 3, 4
+        "DI2023-05-24": {
+            "remove_ts": {
+                "pfc": {
+                    "entities": [
+                        f"PFCS ({gwp_to_use})",
+                        f"FGASES ({gwp_to_use})",
+                        f"KYOTOGHG ({gwp_to_use})",
+                    ],
+                    "time": ["2011"],
+                    "category (BURDI)": ["2.C"],
+                }
+            },
+        }
+    },
     # NAM: more adat in BUR 2, 3
     # NER: 1990, 2000, 2008
     # NGA: miore data in NIR
@@ -2100,9 +2336,45 @@ di_processing_templates = {
     # PAK: 1994, 2008, 2012, 2015 (very limited data)
     # PAN: more data in NIR, BUR2
     # PER: 1994, 2000, 2010, 2012
-    # PNG: 1994, 2000 inconsistent sector coverage
+    "PNG": {  # 1994, 2000 inconsistent sector coverage
+        "DI2023-05-24": {
+            "remove_ts": {
+                "GHG": {  # inconsistent with sectoral data at least in agriculture
+                    "entities": [f"KYOTOGHG ({gwp_to_use})"],
+                    "category (BURDI)": [
+                        "4",
+                        "4.A",
+                        "4.B",
+                        "4.D",
+                        "4.E",
+                        "4.F",
+                        "4.G",
+                    ],
+                    "time": ["1994", "2000"],
+                },
+            },
+            "downscale": {
+                "sectors": {
+                    "4": {
+                        "basket": "4",
+                        "basket_contents": ["4.B", "4.D", "4.E", "4.F", "4.G"],
+                        "entities": ["N2O"],
+                        "dim": "category (BURDI)",
+                    },
+                },
+            },
+        }
+    },
     "PHL": {
         "DI2023-05-24": {  # 1994, 2000
+            "remove_ts": {
+                "waste_CO2": {  # inconsistent with 1994 and unlikely as there
+                    # are no emissions for other gases
+                    "entities": ["CO2"],
+                    "category (BURDI)": ["6"],
+                    "time": ["2000"],
+                }
+            },
             "downscale": {
                 "sectors": {
                     "6": {
@@ -2190,6 +2462,7 @@ di_processing_templates = {
                                 "15163",
                                 "24540",
                             ],
+                            "time": ["2000", "2005", "2010"],
                         },
                     },
                 },
@@ -2739,9 +3012,13 @@ di_processing_info = {
         "default": di_processing_templates["general"]["copyUnspHFC"],
         "DI2023-05-24": di_processing_templates["general"]["copyUnspHFC"],
     },
+    "CAF": {
+        "default": di_processing_templates["CAF"]["DI2023-05-24"],
+        "DI2023-05-24": di_processing_templates["CAF"]["DI2023-05-24"],
+    },
     "CHL": {
-        "default": di_processing_templates["general"]["copyUnspHFC"],
-        "DI2023-05-24": di_processing_templates["general"]["copyUnspHFC"],
+        "default": di_processing_templates["CHL"]["DI2023-05-24"],
+        "DI2023-05-24": di_processing_templates["CHL"]["DI2023-05-24"],
     },
     "CHN": {
         "default": di_processing_templates["CHN"]["DI2023-05-24"],
@@ -2835,10 +3112,6 @@ di_processing_info = {
         "default": di_processing_templates["LCA"]["DI2023-05-24"],
         "DI2023-05-24": di_processing_templates["LCA"]["DI2023-05-24"],
     },
-    "LKA": {
-        "default": di_processing_templates["general"]["copyFGASES"],
-        "DI2023-05-24": di_processing_templates["general"]["copyFGASES"],
-    },
     "LSO": {
         "default": di_processing_templates["LSO"]["DI2023-05-24"],
         "DI2023-05-24": di_processing_templates["LSO"]["DI2023-05-24"],
@@ -2888,13 +3161,17 @@ di_processing_info = {
         "DI2023-05-24": di_processing_templates["general"]["copyUnspHFC"],
     },
     "MOZ": {
-        "default": di_processing_templates["general"]["copyPFC"],
-        "DI2023-05-24": di_processing_templates["general"]["copyPFC"],
+        "default": di_processing_templates["MOZ"]["DI2023-05-24"],
+        "DI2023-05-24": di_processing_templates["MOZ"]["DI2023-05-24"],
     },
     "MUS": {
         "default": di_processing_templates["MUS"]["DI2023-05-24"],
         "DI2023-05-24": di_processing_templates["MUS"]["DI2023-05-24"],
     },
+    "MYS": {
+        "default": di_processing_templates["MYS"]["DI2023-05-24"],
+        "DI2023-05-24": di_processing_templates["MYS"]["DI2023-05-24"],
+    },
     "PHL": {
         "default": di_processing_templates["PHL"]["DI2023-05-24"],
         "DI2023-05-24": di_processing_templates["PHL"]["DI2023-05-24"],
@@ -2903,6 +3180,10 @@ di_processing_info = {
         "default": di_processing_templates["PLW"]["DI2023-05-24"],
         "DI2023-05-24": di_processing_templates["PLW"]["DI2023-05-24"],
     },
+    "PNG": {
+        "default": di_processing_templates["PNG"]["DI2023-05-24"],
+        "DI2023-05-24": di_processing_templates["PNG"]["DI2023-05-24"],
+    },
     "PRY": {
         "default": di_processing_templates["general"]["copyUnspHFCUnspPFC"],
         "DI2023-05-24": di_processing_templates["general"]["copyUnspHFCUnspPFC"],

src/unfccc_ghg_data/unfccc_di_reader/unfccc_di_reader_proc.py

@@ -2,6 +2,7 @@
 Functions for the processing of DI data
 """
 import re
+from copy import deepcopy
 from datetime import date
 from typing import Optional, Union
 
@@ -19,6 +20,7 @@ from .util import DI_date_format
 def process_and_save_UNFCCC_DI_for_country(
     country_code: str,
     date_str: Union[str, None] = None,
+    no_save: bool = False,
 ) -> xr.Dataset:
     """
     process data and save them to disk using default parameters
@@ -73,10 +75,11 @@ def process_and_save_UNFCCC_DI_for_country(
     )
 
     # save
-    if data_processed.coords["time"].to_numpy().size > 0:
-        save_DI_country_data(data_processed, raw=False)
-    else:
-        print(f"No data left after processing for {country_code}")
+    if not no_save:
+        if data_processed.coords["time"].to_numpy().size > 0:
+            save_DI_country_data(data_processed, raw=False)
+        else:
+            print(f"No data left after processing for {country_code}")
 
     return data_processed
 
@@ -150,9 +153,9 @@ def process_UNFCCC_DI_for_country(  # noqa: PLR0913
     # get processing specification
     if processing_info_country is not None:
         if scenario in processing_info_country.keys():
-            processing_info_country_scen = processing_info_country[scenario]
+            processing_info_country_scen = deepcopy(processing_info_country[scenario])
         else:
-            processing_info_country_scen = processing_info_country["default"]
+            processing_info_country_scen = deepcopy(processing_info_country["default"])
     else:
         processing_info_country_scen = None