Merge main into add-docs-and-tests

.gitignore

@@ -1,7 +1,7 @@
 # temporary
 src/unfccc_ghg_data/datasets
 
-# loging
+# logging
 log/*
 geckodriver.log
 

datasets/UNFCCC/CRF2023/CRF2023_raw_2024-01-08.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/3W/vw/MD5E-s35386482--598fd55314d4f82e4ad17f427611b291.csv/MD5E-s35386482--598fd55314d4f82e4ad17f427611b291.csv

datasets/UNFCCC/CRF2023/CRF2023_raw_2024-01-08.nc

@@ -0,0 +1 @@
+../../../.git/annex/objects/zQ/z5/MD5E-s64758200--24838b45d7c339cc13465247e670963e.nc/MD5E-s64758200--24838b45d7c339cc13465247e670963e.nc

datasets/UNFCCC/CRF2023/CRF2023_raw_2024-01-08.yaml

@@ -0,0 +1,30 @@
+attrs:
+  references: https://unfccc.int/ghg-inventories-annex-i-parties/2023
+  rights: ''
+  contact: mail@johannes-guetschow.de
+  title: 'Data submitted in 2023 to the UNFCCC in the common reporting format (CRF)
+    by Australia. Submission date: 13042023'
+  comment: Read fom xlsx file by Johannes Gütschow
+  institution: United Nations Framework Convention on Climate Change (www.unfccc.int)
+  cat: category (CRF2013_2023)
+  area: area (ISO3)
+  scen: scenario (PRIMAP)
+  sec_cats:
+  - c
+  - l
+  - a
+  - s
+  - s
+time_format: '%Y'
+dimensions:
+  '*':
+  - time
+  - category (CRF2013_2023)
+  - source
+  - class
+  - area (ISO3)
+  - scenario (PRIMAP)
+  - provenance
+  - entity
+  - unit
+data_file: CRF2023_raw_2024-01-08.csv

datasets/UNFCCC/DI_non_AnnexI/DI_non_AnnexI_2024-01-15.csv

@@ -0,0 +1 @@
+DI_non_AnnexI_c4f51fb8655d26c0aa53bda2319be7d9_hash.csv

datasets/UNFCCC/DI_non_AnnexI/DI_non_AnnexI_2024-01-15.nc

@@ -0,0 +1 @@
+DI_non_AnnexI_c4f51fb8655d26c0aa53bda2319be7d9_hash.nc

datasets/UNFCCC/DI_non_AnnexI/DI_non_AnnexI_2024-01-15.yaml

@@ -0,0 +1 @@
+DI_non_AnnexI_c4f51fb8655d26c0aa53bda2319be7d9_hash.yaml

datasets/UNFCCC/DI_non_AnnexI/DI_non_AnnexI_2024-01-15_raw.csv

@@ -0,0 +1 @@
+DI_non_AnnexI_d1e91da9f1581fbf3563fe4d276bfe1a_raw_hash.csv

datasets/UNFCCC/DI_non_AnnexI/DI_non_AnnexI_2024-01-15_raw.nc

@@ -0,0 +1 @@
+DI_non_AnnexI_d1e91da9f1581fbf3563fe4d276bfe1a_raw_hash.nc

datasets/UNFCCC/DI_non_AnnexI/DI_non_AnnexI_2024-01-15_raw.yaml

@@ -0,0 +1 @@
+DI_non_AnnexI_d1e91da9f1581fbf3563fe4d276bfe1a_raw_hash.yaml

datasets/UNFCCC/DI_non_AnnexI/DI_non_AnnexI_c4f51fb8655d26c0aa53bda2319be7d9_hash.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/07/pV/MD5E-s14978105--08601f00a2e382f2f3a9657701ad7edb.csv/MD5E-s14978105--08601f00a2e382f2f3a9657701ad7edb.csv

datasets/UNFCCC/DI_non_AnnexI/DI_non_AnnexI_c4f51fb8655d26c0aa53bda2319be7d9_hash.nc

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/QF/MD5E-s5732302--3b1e70c662add9a1312ca91fe4eb7d99.nc/MD5E-s5732302--3b1e70c662add9a1312ca91fe4eb7d99.nc

datasets/UNFCCC/DI_non_AnnexI/DI_non_AnnexI_c4f51fb8655d26c0aa53bda2319be7d9_hash.yaml

@@ -0,0 +1,41 @@
+attrs:
+  references: https://di.unfccc.int
+  rights: ''
+  contact: mail@johannes-guetschow.de
+  institution: United Nations Framework Convention on Climate Change (www.unfccc.int)
+  cat: category (IPCC2006_PRIMAP)
+  area: area (ISO3)
+  scen: scenario (Process_Date)
+  sec_cats:
+  - class
+  - measure
+  comment: Data read from the UNFCCC DI flexible query interface using the API. Data
+    read on 2023-05-24. Processed on 2024-01-15
+  title: 'Data submitted by the following non-AnnexI countries and available in the
+    DI interface, converted to IPCC2006 categories and downscaled where applicable.
+    For download date see scenario. Countries: AFG, AGO, ALB, ARE, ARG, ARM, ATG,
+    AZE, BDI, BEN, BFA, BGD, BHR, BHS, BIH, BLZ, BOL, BRA, BRB, BRN, BTN, BWA, CAF,
+    CHL, CHN, CIV, CMR, COD, COG, COK, COL, COM, CPV, CRI, CUB, DJI, DMA, DOM, DZA,
+    ECU, EGY, ERI, ETH, FJI, FSM, GAB, GEO, GHA, GIN, GMB, GNB, GRD, GTM, GUY, HND,
+    HTI, IDN, IND, IRN, IRQ, ISR, JAM, JOR, KEN, KGZ, KHM, KIR, KNA, KOR, KWT, LAO,
+    LBN, LBR, LCA, LKA, LSO, MAR, MDA, MDG, MDV, MEX, MHL, MKD, MLI, MMR, MNE, MNG,
+    MOZ, MRT, MUS, MWI, MYS, NAM, NER, NGA, NIC, NIU, NPL, NRU, OMN, PAK, PAN, PER,
+    PHL, PLW, PNG, PRK, PRY, PSE, QAT, RWA, SAU, SDN, SEN, SGP, SLB, SLV, SMR, SRB,
+    SSD, STP, SUR, SWZ, SYC, SYR, TCD, TGO, THA, TJK, TKM, TLS, TON, TTO, TUN, TUV,
+    TZA, UGA, URY, UZB, VCT, VEN, VNM, VUT, WSM, YEM, ZAF, ZMB, ZWE'
+time_format: '%Y'
+dimensions:
+  '*':
+  - time
+  - source
+  - measure
+  - class
+  - scenario (Process_Date)
+  - area (ISO3)
+  - provenance
+  - category (IPCC2006_PRIMAP)
+  - entity
+  - unit
+additional_coordinates:
+  orig_cat_name: category (IPCC2006_PRIMAP)
+data_file: DI_non_AnnexI_c4f51fb8655d26c0aa53bda2319be7d9_hash.csv

dodo.py

@@ -1,8 +1,11 @@
-# define tasks for UNFCCC data repository
-from doit import get_var
+"""
+Define the tasks for UNFCCC data repository
+"""
 import os
 import sys
 
+from doit import get_var
+
 # TODO: task for folder mapping
 
 # create virtual environment
@@ -20,13 +23,25 @@ import sys
 #         'verbosity': 2,
 #     }
 
+
 def task_in_venv():
+    """
+    Check if code run from virtual environment and throw an error is not.
+
+    Returns
+    -------
+    Nothing
+
+    """
+
     def in_venv():
         if sys.prefix == sys.base_prefix:
-            raise ValueError("You need to run the code from the virtual environment.")
+            raise ValueError(  # noqa: TRY003
+                "You need to run the code from the virtual environment."
+            )
 
     return {
-        'actions': [in_venv],
+        "actions": [in_venv],
     }
 
 
@@ -35,241 +50,319 @@ def task_set_env():
     """
     Set the environment variable for the module so data is stored in the correct folders
     """
+
     def set_root_path():
         os.environ["UNFCCC_GHG_ROOT_PATH"] = "."
 
     return {
-        'actions': [set_root_path],
+        "actions": [set_root_path],
     }
 
 
 # Task to create the mapping files which map folder names to ISO 3-letter country codes
 read_config_folder = {
-    "folder": get_var('folder', None),
+    "folder": get_var("folder", None),
 }
 
+
 def task_map_folders():
     """
     Create or update the folder mapping in the given folder
     """
     return {
-        'actions': [f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-                    f"--folder={read_config_folder['folder']}"],
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": [
+            f"python src/unfccc_ghg_data/helper/folder_mapping.py "
+            f"--folder={read_config_folder['folder']}"
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 # Tasks for getting submissions and downloading them
 def task_update_bur():
-    """ Update list of BUR submissions """
+    """Update list of BUR submissions"""
     return {
-        'targets': ['downloaded_data/UNFCCC/submissions-bur.csv'],
-        'actions': ['datalad run -m "Fetch BUR submissions" '
-                    '-o downloaded_data/UNFCCC/submissions-bur.csv '
-                    'python src/unfccc_ghg_data/unfccc_downloader/fetch_submissions_bur.py'],
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "targets": ["downloaded_data/UNFCCC/submissions-bur.csv"],
+        "actions": [
+            'datalad run -m "Fetch BUR submissions" '
+            "-o downloaded_data/UNFCCC/submissions-bur.csv "
+            "python src/unfccc_ghg_data/unfccc_downloader/fetch_submissions_bur.py"
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 def task_download_bur():
-    """ Download BUR submissions """
+    """Download BUR submissions"""
     return {
         #'file_dep': ['downloaded_data/UNFCCC/submissions-bur.csv'],
         # deactivate file_dep fow now as it will always run fetch submissions
         # before download
-        'actions': ['datalad run -m "Download BUR submissions" '
-                    '-i downloaded_data/UNFCCC/submissions-bur.csv '
-                    'python src/unfccc_ghg_data/unfccc_downloader/download_nonannexI.py --category=BUR',
-                    f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-                    f"--folder=downloaded_data/UNFCCC"
-                    ],
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": [
+            'datalad run -m "Download BUR submissions" '
+            "-i downloaded_data/UNFCCC/submissions-bur.csv "
+            "python src/unfccc_ghg_data/unfccc_downloader/download_nonannexI.py --category=BUR",
+            "python src/unfccc_ghg_data/helper/folder_mapping.py "
+            "--folder=downloaded_data/UNFCCC",
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 def task_update_nc():
-    """ Update list of NC submissions """
+    """Update list of NC submissions"""
     return {
-        'targets': ['downloaded_data/UNFCCC/submissions-nc.csv'],
-        'actions': ['datalad run -m "Fetch NC submissions" '
-                    '-o downloaded_data/UNFCCC/submissions-nc.csv '
-                    'python src/unfccc_ghg_data/unfccc_downloader/fetch_submissions_nc.py'],
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "targets": ["downloaded_data/UNFCCC/submissions-nc.csv"],
+        "actions": [
+            'datalad run -m "Fetch NC submissions" '
+            "-o downloaded_data/UNFCCC/submissions-nc.csv "
+            "python src/unfccc_ghg_data/unfccc_downloader/fetch_submissions_nc.py"
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 def task_download_nc():
-    """ Download NC submissions """
+    """Download NC submissions"""
     return {
         #'file_dep': ['downloaded_data/UNFCCC/submissions-nc.csv'],
         # deactivate file_dep fow now as it will always run fetch submissions
         # before download
-        'actions': ['datalad run -m "Download NC submissions" '
-                    '-i downloaded_data/UNFCCC/submissions-nc.csv '
-                    'python src/unfccc_ghg_data/unfccc_downloader/download_nonannexI.py --category=NC',
-                    f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-                    f"--folder=downloaded_data/UNFCCC"
-                    ],
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": [
+            'datalad run -m "Download NC submissions" '
+            "-i downloaded_data/UNFCCC/submissions-nc.csv "
+            "python src/unfccc_ghg_data/unfccc_downloader/download_nonannexI.py --category=NC",
+            "python src/unfccc_ghg_data/helper/folder_mapping.py "
+            "--folder=downloaded_data/UNFCCC",
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
+
 # annexI data: one update call for all data types (as they are on one page)
 # but for each year separately.
 # downloading is per year and
 update_aI_config = {
-    "year": get_var('year', None),
-    "category": get_var('category', None),
+    "year": get_var("year", None),
+    "category": get_var("category", None),
 }
 
 
 def task_update_annexi():
-    """ Update list of AnnexI submissions """
+    """Update list of AnnexI submissions"""
     return {
-        'targets': [f"downloaded_data/UNFCCC/submissions-annexI_{update_aI_config['year']}.csv"],
-        'actions': [f"datalad run -m 'Fetch AnnexI submissions for {update_aI_config['year']}' "
-                    "--explicit "
-                    f"-o downloaded_data/UNFCCC/submissions-annexI_{update_aI_config['year']}.csv "
-                    f"python src/unfccc_ghg_data/unfccc_downloader/fetch_submissions_annexI.py "
-                    f"--year={update_aI_config['year']}"],
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "targets": [
+            f"downloaded_data/UNFCCC/submissions-annexI_{update_aI_config['year']}.csv"
+        ],
+        "actions": [
+            f"datalad run -m 'Fetch AnnexI submissions for {update_aI_config['year']}' "
+            "--explicit "
+            f"-o downloaded_data/UNFCCC/submissions-annexI_{update_aI_config['year']}.csv "
+            f"python src/unfccc_ghg_data/unfccc_downloader/fetch_submissions_annexI.py "
+            f"--year={update_aI_config['year']}"
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 def task_download_annexi():
-    """ Download AnnexI submissions """
+    """Download AnnexI submissions"""
+    return {
+        #'file_dep': ['downloaded_data/UNFCCC/submissions-nc.csv'],
+        # deactivate file_dep fow now as it will always run fetch submissions
+        # before download
+        "actions": [
+            f"datalad run -m 'Download AnnexI submissions for "
+            f"{update_aI_config['category']}{update_aI_config['year']}' "
+            f"-i downloaded_data/UNFCCC/submissions-annexI_{update_aI_config['year']}.csv "
+            f"python src/unfccc_ghg_data/unfccc_downloader/download_annexI.py "
+            f"--category={update_aI_config['category']} --year={update_aI_config['year']}",
+            "python src/unfccc_ghg_data/helper/folder_mapping.py "
+            "--folder=downloaded_data/UNFCCC",
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
+    }
+
+
+# annexI data: one update call for all data types (as they are on one page)
+# but for each year separately.
+# downloading is per year and
+update_btr_config = {
+    "round": get_var("round", None),
+}
+
+
+def task_update_btr():
+    """Update list of BTR submissions"""
+    return {
+        "targets": [
+            f"downloaded_data/UNFCCC/submissions-BTR{update_btr_config['round']}.csv"
+        ],
+        "actions": [
+            f"datalad run -m 'Fetch Biannial Transparency Report submissions for "
+            f"BTR{update_btr_config['round']}' "
+            "--explicit "
+            f"-o downloaded_data/UNFCCC/submissions-BTR{update_btr_config['round']}.csv "
+            f"./venv/bin/python UNFCCC_GHG_data/UNFCCC_downloader/fetch_submissions_btr.py "
+            f"--round={update_btr_config['round']}"
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["setup_venv"],
+    }
+
+
+def task_download_btr():
+    """Download BTR submissions"""
     return {
         #'file_dep': ['downloaded_data/UNFCCC/submissions-nc.csv'],
         # deactivate file_dep fow now as it will always run fetch submissions
         # before download
-        'actions': [f"datalad run -m 'Download AnnexI submissions for "
-                    f"{update_aI_config['category']}{update_aI_config['year']}' "
-                    f"-i downloaded_data/UNFCCC/submissions-annexI_{update_aI_config['year']}.csv "
-                    f"python src/unfccc_ghg_data/unfccc_downloader/download_annexI.py "
-                    f"--category={update_aI_config['category']} --year={update_aI_config['year']}",
-                    f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-                    f"--folder=downloaded_data/UNFCCC"
-                    ],
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": [
+            f"datalad run -m 'Download BTR submissions for "
+            f"BTR{update_btr_config['round']}' "
+            f"-i downloaded_data/UNFCCC/submissions-BTR{update_btr_config['round']}.csv "
+            f"./venv/bin/python UNFCCC_GHG_data/UNFCCC_downloader/download_btr.py "
+            f"--round={update_btr_config['round']}",
+            "./venv/bin/python UNFCCC_GHG_data/helper/folder_mapping.py "
+            "--folder=downloaded_data/UNFCCC",
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["setup_venv"],
     }
 
 
 def task_download_ndc():
-    """ Download NDC submissions """
+    """Download NDC submissions"""
     return {
-        'actions': ['datalad run -m "Download NDC submissions" '
-                    'python src/unfccc_ghg_data/unfccc_downloader/download_ndc.py',
-                    f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-                    f"--folder=downloaded_data/UNFCCC"
-                    ],
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": [
+            'datalad run -m "Download NDC submissions" '
+            "python src/unfccc_ghg_data/unfccc_downloader/download_ndc.py",
+            "python src/unfccc_ghg_data/helper/folder_mapping.py "
+            "--folder=downloaded_data/UNFCCC",
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 # read UNFCCC submissions.
 # datalad run is called from within the read_UNFCCC_submission.py script
 read_config = {
-    "country": get_var('country', None),
-    "submission": get_var('submission', None),
+    "country": get_var("country", None),
+    "submission": get_var("submission", None),
 }
 
 
 # TODO: make individual task for non-UNFCCC submissions
 def task_read_unfccc_submission():
-    """ Read submission for a country (if code exists) (not for CRF)"""
+    """Read submission for a country (if code exists) (not for CRF)"""
     return {
-        'actions': [f"python src/unfccc_ghg_data/unfccc_reader/read_UNFCCC_submission.py "
-                    f"--country={read_config['country']} --submission={read_config['submission']}",
-                    f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-                    f"--folder=extracted_data/UNFCCC"
-                    ],
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": [
+            f"python src/unfccc_ghg_data/unfccc_reader/read_UNFCCC_submission.py "
+            f"--country={read_config['country']} --submission={read_config['submission']}",
+            "python src/unfccc_ghg_data/helper/folder_mapping.py "
+            "--folder=extracted_data/UNFCCC",
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 # read UNFCCC submissions.
 # datalad run is called from within the read_UNFCCC_submission.py script
 read_config_crf = {
-    "country": get_var('country', None),
-    "submission_year": get_var('submission_year', None),
-    "submission_date": get_var('submission_date', None),
-    "re_read": get_var('re_read', False),
-    "countries": get_var('countries', None),
-    "data_year": get_var('data_year', None),
-    "totest": get_var('totest', None),
+    "country": get_var("country", None),
+    "submission_year": get_var("submission_year", None),
+    "submission_date": get_var("submission_date", None),
+    "re_read": get_var("re_read", False),
+    "countries": get_var("countries", None),
+    "data_year": get_var("data_year", None),
+    "totest": get_var("totest", None),
 }
 
+
 def task_read_unfccc_crf_submission():
-    """ Read CRF submission for a country """
+    """Read CRF submission for a country"""
     actions = [
         f"python src/unfccc_ghg_data/unfccc_crf_reader"
         f"/read_unfccc_crf_submission_datalad.py "
         f"--country={read_config_crf['country']} "
         f"--submission_year={read_config_crf['submission_year']} "
         f"--submission_date={read_config_crf['submission_date']} ",
-        f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-        f"--folder=extracted_data/UNFCCC"
-        ]
+        "python src/unfccc_ghg_data/helper/folder_mapping.py "
+        "--folder=extracted_data/UNFCCC",
+    ]
     if read_config_crf["re_read"] == "True":
         actions[0] = actions[0] + " --re_read"
     return {
-        'actions': actions,
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": actions,
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 def task_read_new_unfccc_crf_for_year():
-    """ Read CRF submission for all countries for given submission year. by default only reads
-    data not present yet. Only reads the latest updated submission for each country."""
-    actions = [f"python src/unfccc_ghg_data/unfccc_crf_reader"
-               f"/read_new_unfccc_crf_for_year_datalad.py "
-               f"--submission_year={read_config_crf['submission_year']} ",
-               f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-               f"--folder=extracted_data/UNFCCC"
-               ]
+    """
+    Read CRF submission for all countries for given submission year.
+
+    By default only reads data not present yet. Only reads the latest updated
+    submission for each country.
+    """
+    actions = [
+        f"python src/unfccc_ghg_data/unfccc_crf_reader"
+        f"/read_new_unfccc_crf_for_year_datalad.py "
+        f"--submission_year={read_config_crf['submission_year']} ",
+        "python src/unfccc_ghg_data/helper/folder_mapping.py "
+        "--folder=extracted_data/UNFCCC",
+    ]
     # specifying countries is currently disabled duo to problems with command line
     # list arguments
-    #if read_config_crf["countries"] is not None:
+    # if read_config_crf["countries"] is not None:
     #        actions[0] = actions[0] + f"--countries={read_config_crf['countries']} "
     if read_config_crf["re_read"] == "True":
         actions[0] = actions[0] + " --re_read"
     return {
         #'basename': "Read_CRF_year",
-        'actions': actions,
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": actions,
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 def task_test_read_unfccc_crf_for_year():
-    """ Read CRF submission for all countries for given submission year. by default only reads
-    data not present yet. Only reads the latest updated submission for each country."""
-    actions = [f"python "
-               f"src/unfccc_ghg_data/unfccc_crf_reader"
-               f"/test_read_unfccc_crf_for_year.py "
-               f"--submission_year={read_config_crf['submission_year']} "
-               f"--country={read_config_crf['country']} "
-               ]
+    """
+    Test CRF reading.
+
+    Test CRF with a single year only for speed and logging to extend specifications
+    if necessary.
+    """
+    actions = [
+        f"python "
+        f"src/unfccc_ghg_data/unfccc_crf_reader"
+        f"/test_read_unfccc_crf_for_year.py "
+        f"--submission_year={read_config_crf['submission_year']} "
+        f"--country={read_config_crf['country']} "
+    ]
     if read_config_crf["totest"] == "True":
         actions[0] = actions[0] + " --totest"
 
@@ -277,118 +370,133 @@ def task_test_read_unfccc_crf_for_year():
         actions[0] = actions[0] + f"--data_year={read_config_crf['data_year']} "
     return {
         #'basename': "Read_CRF_year",
-        'actions': actions,
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": actions,
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 def task_compile_raw_unfccc_crf_for_year():
-    """ Read CRF submission for all countries for given submission year. by default only reads
-    data not present yet. Only reads the latest updated submission for each country."""
-    actions = [f"python "
-               f"src/unfccc_ghg_data/unfccc_crf_reader/crf_raw_for_year.py "
-               f"--submission_year={read_config_crf['submission_year']} "
-               ]
+    """
+    Collect all latest CRF submissions for a given year
+
+    Reads the latest data fromt he extracted data folder for each country.
+    Notifies the user if new data are available in the downloaded_data folder
+    which have not yet been read.
+
+    Data are saved in the datasets/UNFCCC/CRFYYYY folder.
+    """
+    actions = [
+        f"python "
+        f"src/unfccc_ghg_data/unfccc_crf_reader/crf_raw_for_year.py "
+        f"--submission_year={read_config_crf['submission_year']} "
+    ]
     return {
-        'actions': actions,
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": actions,
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
+
 # tasks for DI reader
 # datalad run is called from within the read_unfccc_di_for_country.py script
 read_config_di = {
-    "country": get_var('country', None),
-    "date": get_var('date', None),
-    "annexI": get_var('annexI', False),
-    #"countries": get_var('countries', None),
+    "country": get_var("country", None),
+    "date": get_var("date", None),
+    "annexI": get_var("annexI", False),
+    # "countries": get_var('countries', None),
 }
 
+
 def task_read_unfccc_di_for_country():
-    """ Read DI data for a country """
+    """Read DI data for a country"""
     actions = [
         f"python "
         f"src/unfccc_ghg_data/unfccc_di_reader/read_unfccc_di_for_country_datalad.py "
         f"--country={read_config_di['country']}",
-        f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-        f"--folder=extracted_data/UNFCCC"
-        ]
+        "python src/unfccc_ghg_data/helper/folder_mapping.py "
+        "--folder=extracted_data/UNFCCC",
+    ]
     return {
-        'actions': actions,
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": actions,
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
+
 def task_process_unfccc_di_for_country():
-    """ Process DI data for a country """
+    """Process DI data for a country"""
     actions = [
         f"python "
         f"src/unfccc_ghg_data/unfccc_di_reader/process_unfccc_di_for_country_datalad"
         f".py "
         f"--country={read_config_di['country']} --date={read_config_di['date']}",
-        f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-        f"--folder=extracted_data/UNFCCC"
-        ]
+        "python src/unfccc_ghg_data/helper/folder_mapping.py "
+        "--folder=extracted_data/UNFCCC",
+    ]
     return {
-        'actions': actions,
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": actions,
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
+
 def task_read_unfccc_di_for_country_group():
-    """ Read DI data for a country group """
+    """Read DI data for a country group"""
     actions = [
-        f"python "
-        f"src/unfccc_ghg_data/unfccc_di_reader/read_unfccc_di_for_country_group_datalad"
-        f".py",
-        f"python src/unfccc_ghg_data/helper/folder_mapping.py "
-        f"--folder=extracted_data/UNFCCC"
-        ]
+        "python "
+        "src/unfccc_ghg_data/unfccc_di_reader/read_unfccc_di_for_country_group_datalad"
+        ".py",
+        "python src/unfccc_ghg_data/helper/folder_mapping.py "
+        "--folder=extracted_data/UNFCCC",
+    ]
     if read_config_di["annexI"] == "True":
         actions[0] = actions[0] + " --annexI"
 
     return {
-        'actions': actions,
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": actions,
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
 
 def task_process_unfccc_di_for_country_group():
-    """ Process DI data for a country group """
+    """Process DI data for a country group"""
     actions = [
-        f"python "
-        f"src/unfccc_ghg_data/unfccc_di_reader"
-        f"/process_unfccc_di_for_country_group_datalad"
-        f".py",
-        ]
+        "python "
+        "src/unfccc_ghg_data/unfccc_di_reader"
+        "/process_unfccc_di_for_country_group_datalad"
+        ".py",
+    ]
     if read_config_di["annexI"] == "True":
         actions[0] = actions[0] + " --annexI"
     if read_config_di["date"] is not None:
         actions[0] = actions[0] + f" --date={read_config_di['date']}"
 
     return {
-        'actions': actions,
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": actions,
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
 
+
 # general tasks
 def task_country_info():
-    """ Print information on submissions and datasets
-    available for given country"""
+    """
+    Print information on submissions and datasets available for given country
+    """
     return {
-        'actions': [f"python src/unfccc_ghg_data/helper/country_info.py "
-                    f"--country={read_config['country']}"],
-        'task_dep': ['set_env'],
-        'verbosity': 2,
-        'setup': ['in_venv'],
+        "actions": [
+            f"python src/unfccc_ghg_data/helper/country_info.py "
+            f"--country={read_config['country']}"
+        ],
+        "task_dep": ["set_env"],
+        "verbosity": 2,
+        "setup": ["in_venv"],
     }
-

downloaded_data/UNFCCC/00_new_downloads_BTR1-2024-05-03.csv

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downloaded_data/UNFCCC/00_new_downloads_BUR-2023-12-18.csv

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downloaded_data/UNFCCC/00_new_downloads_BUR-2024-02-08.csv

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downloaded_data/UNFCCC/00_new_downloads_BUR-2024-03-14.csv

@@ -0,0 +1 @@
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downloaded_data/UNFCCC/00_new_downloads_BUR-2024-04-26.csv

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downloaded_data/UNFCCC/00_new_downloads_CRF2023-2023-12-18.csv

@@ -0,0 +1 @@
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downloaded_data/UNFCCC/00_new_downloads_CRF2023-2024-01-08.csv

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downloaded_data/UNFCCC/00_new_downloads_NC-2024-02-09.csv

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downloaded_data/UNFCCC/Algeria/BUR1/BUR1_Alg%C3%A9rie_r%C3%A9vis%C3%A9_VF_22102023_rev_7.pdf

@@ -0,0 +1 @@
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downloaded_data/UNFCCC/Algeria/BUR1/NIR_Algeria_Final_VF_22102023_rev_6.pdf

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